MmuEX6012383 @ mm10
Exon Skipping
Gene
ENSMUSG00000030761 | Myo7a
Description
myosin VIIA [Source:MGI Symbol;Acc:MGI:104510]
Coordinates
chr7:98097613-98102702:-
Coord C1 exon
chr7:98102550-98102702
Coord A exon
chr7:98098187-98098371
Coord C2 exon
chr7:98097613-98097734
Length
185 bp
Sequences
Splice sites
3' ss Seq
CTGTCCCTTGCTGCTTGCAGACG
3' ss Score
9.04
5' ss Seq
CAGGTAGGT
5' ss Score
10.28
Exon sequences
Seq C1 exon
GAACACTGGATATCCCCTCAGAATGCCACGCACATCAAGCCAATGCACCCCACATCGGTGCACGGCGTGGAGGACATGATCCGCCTGGGGGATCTCAACGAGGCAGGCATCCTTCGAAACCTTCTCATTCGCTACCGGGACCACCTCATCTAT
Seq A exon
ACGTACACAGGTTCCATCCTGGTGGCCGTGAACCCCTACCAGCTGCTCTCCATCTACTCGCCAGAGCACATCCGCCAGTACACCAACAAGAAGATAGGGGAGATGCCCCCCCACATCTTCGCCATTGCTGACAACTGCTACTTCAACATGAAACGCAACAACCGGGACCAGTGCTGTATTATCAG
Seq C2 exon
CGGGGAGTCGGGAGCTGGCAAGACAGAGAGCACAAAGTTGATCCTGCAGTTCCTGGCAGCCATCAGTGGACAGCACTCATGGATCGAGCAGCAGGTGCTGGAGGCCACCCCGATCCTGGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000030761-'18-18,'18-17,22-18=AN
Average complexity
A_C1
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.157 A=0.008 C2=0.000
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=PU(38.4=54.9)
A:
PF0006316=Myosin_head=FE(9.2=100)
C2:
PF0006316=Myosin_head=FE(6.2=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGGATATCCCCTCAGAATGCC
R:
CTGCTGCTCGATCCATGAGTG
Band lengths:
242-427
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types