DreEX6084405 @ danRer10
Exon Skipping
Gene
ENSDARG00000044632 | myo7ab
Description
myosin VIIAb [Source:ZFIN;Acc:ZDB-GENE-091110-4]
Coordinates
chr21:22202337-22216000:+
Coord C1 exon
chr21:22202337-22202489
Coord A exon
chr21:22215605-22215789
Coord C2 exon
chr21:22215879-22216000
Length
185 bp
Sequences
Splice sites
3' ss Seq
TCAAAAATAATGCATTTCAGACA
3' ss Score
3.76
5' ss Seq
CAGGTAACT
5' ss Score
8.63
Exon sequences
Seq C1 exon
GAGCAACAGATCTCTCTTCAGAATGCAACGAACATCAAGCCCATGCACCCAACCTCCATTCACGGGGTGGAGGATATGATCCGCCTAGGGGACCTGAATGAAGCTGGGATTCTTAGAAATCTCCTGATTCGTTACAATGACAGAGTCATATAT
Seq A exon
ACATATACTGGATCAATCCTGGTAGCGGTGAATCCATACCAGCTTCTGCCCATCTACACCCCCGATCAGATCCGGCTCTACACCAACAAAAAGATCGGAGAGATGCCGCCGCACATCTTTGGCATTGCAGACAACTGCTACTTCAGCATGCAAAGAAACAAGAAGGACCAGTGCTGCATCATCAG
Seq C2 exon
CGGTGAGTCTGGAGCTGGAAAGACGGAGAGCACCAAGCTCATCCTGCAGTTCCTGGCAGCTATAAGTGGCCAACACTCCTGGATTGAGCAGCAGGTTCTGGAGGCCAACCCGATTTTGGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000044632-'1-3,'1-2,3-3=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.077 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=PU(4.3=53.8)
A:
PF0006316=Myosin_head=FE(9.5=100)
C2:
PF0006316=Myosin_head=FE(6.1=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AACGAACATCAAGCCCATGCA
R:
TTCCAAAATCGGGTTGGCCTC
Band lengths:
248-433
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]