BtaEX6060186 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000004561 | PAX6
Description
Bos taurus paired box 6 (PAX6), mRNA. [Source:RefSeq mRNA;Acc:NM_001040645]
Coordinates
chr15:63360987-63367328:-
Coord C1 exon
chr15:63367163-63367328
Coord A exon
chr15:63361533-63361691
Coord C2 exon
chr15:63360987-63361069
Length
159 bp
Sequences
Splice sites
3' ss Seq
TCCTGTTCCTTTTTTTCCAGATG
3' ss Score
10.97
5' ss Seq
AAGGTGATG
5' ss Score
5.22
Exon sequences
Seq C1 exon
GTGTCATCAATAAACAGAGTTCTTCGCAACCTGGCTAGCGAAAAGCAACAGATGGGCGCAGACGGCATGTATGATAAACTAAGGATGTTGAACGGGCAGACCGGAAGCTGGGGCACCCGCCCGGGTTGGTATCCGGGAACATCAGTGCCAGGGCAACCTACGCAAG
Seq A exon
ATGGCTGCCAGCAGCAGGAAGGAGGGGGAGAGAATACCAACTCCATCAGTTCCAATGGAGAAGATTCAGATGAGGCCCAAATGCGACTTCAGCTGAAGCGGAAGCTGCAAAGAAATAGAACATCCTTTACCCAAGAGCAAATTGAGGCCCTGGAGAAAG
Seq C2 exon
AGTTTGAGAGAACCCATTATCCAGATGTGTTTGCCCGAGAAAGACTAGCGGCCAAAATAGATCTACCTGAAGCGAGAATACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000004561-'16-9,'16-8,17-9=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (disopred):
C1=0.786 A=1.000 C2=0.982
Domain overlap (PFAM):
C1:
PF0029213=PAX=PD(6.4=14.3)
A:
PF0004624=Homeobox=PU(29.8=31.5)
C2:
PF0004624=Homeobox=FE(47.4=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCAATAAACAGAGTTCTTCGCAACC
R:
CTGTATTCTCGCTTCAGGTAGA
Band lengths:
243-402
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]