DreEX0053706 @ danRer10
Exon Skipping
Gene
ENSDARG00000103379 | pax6a
Description
paired box 6a [Source:ZFIN;Acc:ZDB-GENE-990415-200]
Coordinates
chr25:14937543-14942244:-
Coord C1 exon
chr25:14942079-14942244
Coord A exon
chr25:14938075-14938233
Coord C2 exon
chr25:14937543-14937625
Length
159 bp
Sequences
Splice sites
3' ss Seq
ATGTTTAATTTGATTTTCAGATG
3' ss Score
8.8
5' ss Seq
AAGGTAAAC
5' ss Score
8.14
Exon sequences
Seq C1 exon
GTGTCATCGATAAACAGAGTACTGCGCAACCTGGCTAGCGAAAAGCAACAGATGGGCGCAGATGGCATGTATGAAAAGCTGAGGATGCTGAACGGTCAGACCGGCACGTGGGGGACCCGGCCGGGCTGGTACCCCGGAACCTCGGTGCCAGGACAGCCCAATCAAG
Seq A exon
ATGGTTGCCAACAGTCAGACGGAGGCGGTGAGAACACAAACTCAATAAGCTCCAATGGCGAGGACTCAGATGAGACCCAAATGAGGCTTCAGCTTAAACGAAAACTGCAAAGGAATCGCACTTCTTTCACACAAGAACAAATAGAAGCACTTGAAAAAG
Seq C2 exon
AGTTTGAAAGAACGCACTACCCTGACGTTTTTGCACGAGAAAGACTTGCTGCAAAAATAGATTTACCAGAAGCAAGAATACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000103379-'17-19,'17-18,21-19
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (disopred):
C1=0.642 A=0.699 C2=0.697
Domain overlap (PFAM):
C1:
PF0029213=PAX=PD(6.4=14.3)
A:
PF0004624=Homeobox=PU(43.6=31.5)
C2:
PF0004624=Homeobox=FE(47.4=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCGATAAACAGAGTACTGCGCA
R:
CTGTATTCTTGCTTCTGGTAAATCT
Band lengths:
243-402
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]