RnoEX6018055 @ rn6
Exon Skipping
Gene
ENSRNOG00000004410 | Pax6
Description
paired box 6 [Source:RGD Symbol;Acc:3258]
Coordinates
chr3:95717156-95723765:+
Coord C1 exon
chr3:95717156-95717321
Coord A exon
chr3:95723107-95723265
Coord C2 exon
chr3:95723683-95723765
Length
159 bp
Sequences
Splice sites
3' ss Seq
TCCTATTCTTTTTGTTGCAGACG
3' ss Score
10.17
5' ss Seq
AAGGTGACT
5' ss Score
6.64
Exon sequences
Seq C1 exon
GTGTCATCAATAAACAGAGTTCTTCGCAACCTGGCTAGCGAAAAGCAACAGATGGGCGCAGACGGCATGTATGATAAACTAAGGATGCTGAACGGACAGACCGGAAGCTGGGGCACCCGCCCTGGTTGGTATCCCGGGACGTCAGTACCAGGGCAACCCACGCAAG
Seq A exon
ACGGCTGCCAGCAACAGGAAGGACAGGGAGAAAACACCAACTCCATCAGCTCCAATGGAGAAGACTCGGATGAGGCTCAAATGCGGCTGCAGCTGAAGCGGAAGCTGCAGAGAAATAGAACATCTTTTACCCAGGAGCAGATTGAGGCTCTGGAGAAAG
Seq C2 exon
AGTTTGAGAGGACCCATTATCCAGATGTGTTTGCCCGGGAAAGACTAGCAGCCAAAATAGATCTACCTGAAGCAAGGATACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000004410-'20-11,'20-10,21-11=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (disopred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
PF0029213=PAX=PD(6.4=14.3)
A:
PF0004624=Homeobox=PU(29.8=31.5)
C2:
PF0004624=Homeobox=FE(47.4=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCAATAAACAGAGTTCTTCGCAACC
R:
TGTATCCTTGCTTCAGGTAGATCT
Band lengths:
242-401
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]