MmuEX6103398 @ mm10
Exon Skipping
Gene
ENSMUSG00000027168 | Pax6
Description
paired box 6 [Source:MGI Symbol;Acc:MGI:97490]
Coordinates
chr2:105685778-105692276:+
Coord C1 exon
chr2:105685778-105685943
Coord A exon
chr2:105691565-105691723
Coord C2 exon
chr2:105692194-105692276
Length
159 bp
Sequences
Splice sites
3' ss Seq
TCCTATTCTTTTTGTTGCAGATG
3' ss Score
11.35
5' ss Seq
AAGGTGACT
5' ss Score
6.64
Exon sequences
Seq C1 exon
GTGTCATCAATAAACAGAGTTCTTCGCAACCTGGCTAGCGAAAAGCAACAGATGGGCGCAGACGGCATGTATGATAAACTAAGGATGTTGAACGGGCAGACCGGAAGCTGGGGCACACGCCCTGGTTGGTATCCCGGGACTTCAGTACCAGGGCAACCCACGCAAG
Seq A exon
ATGGCTGCCAGCAACAGGAAGGAGGGGGAGAGAACACCAACTCCATCAGTTCTAACGGAGAAGACTCGGATGAAGCTCAGATGCGACTTCAGCTGAAGCGGAAGCTGCAAAGAAATAGAACATCTTTTACCCAAGAGCAGATTGAGGCTCTGGAGAAAG
Seq C2 exon
AGTTTGAGAGGACCCATTATCCAGATGTGTTTGCCCGGGAAAGACTAGCAGCCAAAATAGATCTACCTGAAGCAAGAATACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000027168-'31-30,'31-28,37-30=AN
Average complexity
A_S
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (disopred):
C1=0.784 A=0.959 C2=0.873
Domain overlap (PFAM):
C1:
PF0029213=PAX=PD(5.8=14.3)
A:
PF0004624=Homeobox=PU(29.8=31.5)
C2:
PF0004624=Homeobox=FE(47.4=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCAATAAACAGAGTTCTTCGCAACC
R:
TGTATTCTTGCTTCAGGTAGATCT
Band lengths:
242-401
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types