MmuEX6103398 @ mm9
Exon Skipping
Gene
ENSMUSG00000027168 | Pax6
Description
paired box gene 6 [Source:MGI Symbol;Acc:MGI:97490]
Coordinates
chr2:105525935-105532433:+
Coord C1 exon
chr2:105525935-105526100
Coord A exon
chr2:105531722-105531880
Coord C2 exon
chr2:105532351-105532433
Length
159 bp
Sequences
Splice sites
3' ss Seq
TCCTATTCTTTTTGTTGCAGATG
3' ss Score
11.35
5' ss Seq
AAGGTGACT
5' ss Score
6.64
Exon sequences
Seq C1 exon
GTGTCATCAATAAACAGAGTTCTTCGCAACCTGGCTAGCGAAAAGCAACAGATGGGCGCAGACGGCATGTATGATAAACTAAGGATGTTGAACGGGCAGACCGGAAGCTGGGGCACACGCCCTGGTTGGTATCCCGGGACTTCAGTACCAGGGCAACCCACGCAAG
Seq A exon
ATGGCTGCCAGCAACAGGAAGGAGGGGGAGAGAACACCAACTCCATCAGTTCTAACGGAGAAGACTCGGATGAAGCTCAGATGCGACTTCAGCTGAAGCGGAAGCTGCAAAGAAATAGAACATCTTTTACCCAAGAGCAGATTGAGGCTCTGGAGAAAG
Seq C2 exon
AGTTTGAGAGGACCCATTATCCAGATGTGTTTGCCCGGGAAAGACTAGCAGCCAAAATAGATCTACCTGAAGCAAGAATACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000027168-'31-35,'31-33,33-35=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (disopred):
C1=0.830 A=0.926 C2=0.584
Domain overlap (PFAM):
C1:
PF0029213=PAX=PD(23.0=50.0)
A:
PF0004624=Homeobox=PU(29.8=31.5)
C2:
PF0004624=Homeobox=PD(40.0=85.7)
Other Inclusion Isoforms:
ENSMUSP00000016435, ENSMUSP00000087878, ENSMUSP00000106711, ENSMUSP00000106712, ENSMUSP00000106713, ENSMUSP00000106714, ENSMUSP00000106715, ENSMUSP00000106716, ENSMUSP00000106717, ENSMUSP00000115032, ENSMUSP00000117154, ENSMUSP00000118457, ENSMUSP00000121302, ENSMUSP00000121345, ENSMUSP00000122311, ENSMUSP00000128301, ENSMUSP00000133346, ENSMUSP00000133872, ENSMUSP00000133980
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCAATAAACAGAGTTCTTCGCAACC
R:
TGTATTCTTGCTTCAGGTAGATCT
Band lengths:
242-401
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: