BtaEX6062817 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000038281 | CSMD3
Description
CUB and Sushi multiple domains 3 [Source:HGNC Symbol;Acc:HGNC:19291]
Coordinates
chr14:54336918-54348021:+
Coord C1 exon
chr14:54336918-54337112
Coord A exon
chr14:54339754-54339927
Coord C2 exon
chr14:54347848-54348021
Length
174 bp
Sequences
Splice sites
3' ss Seq
ATTATGTTATTGTTTTCAAGTTA
3' ss Score
5.41
5' ss Seq
TAGGTACAG
5' ss Score
4.67
Exon sequences
Seq C1 exon
TTGTTACATGTCCAAGTATCAATTCCTTTACTTTGGAACATGGAAGATGGAGAATTGTGAATGGTTCCCATTACGAATACAAAACCAAAGTAGTTTTCAGCTGTGATCCTGGTTATCATGGATTAGGTCCTGCTTCTATTGAATGTCTTCCTAATGGTACCTGGAGTTGGAGAAATGAAAGACCATATTGCCAAA
Seq A exon
TTATTTCCTGTGGAGAACTCCCAACCCCTCCCAATGGAAATAAGATTGGAACTCAGACTTCATATGGCTCAACAGCCATCTTTACCTGTGATTCAGGATTCATGCTTGTGGGTTCTGCTGTTCGGGAATGCCTTTCTTCAGGTCTTTGGAGTGGATCAGACACCAGATGCCTAG
Seq C2 exon
CGGGTCACTGTGGAATTCCGGAGCTTATTGTGAATGGTCAAGTCATTGGAGAAAACTATGGATACAGAGACACAGTTGTTTATCAGTGTAATCCTGGTTTCCGCTTGATTGGTTCTTCAGTAAGAATATGTCAACAAGATCACAATTGGTCTGGTCAACTTCCAGCCTGTGTGC
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000038281-'50-54,'50-53,51-54=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.034 C2=0.000
Domain overlap (PFAM):
C1:
PF0008415=Sushi=WD(100=93.9)
A:
PF0008415=Sushi=WD(100=91.5)
C2:
PF0008415=Sushi=WD(100=91.5)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGAGAATTGTGAATGGTTCCCA
R:
AGCGGAAACCAGGATTACACTG
Band lengths:
253-427
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]