RnoEX0003320 @ rn6
Exon Skipping
Gene
ENSRNOG00000004937 | AABR07057765.1
Description
NA
Coordinates
chr7:86749428-86755732:-
Coord C1 exon
chr7:86755538-86755732
Coord A exon
chr7:86753970-86754143
Coord C2 exon
chr7:86749428-86749601
Length
174 bp
Sequences
Splice sites
3' ss Seq
GTTTACTTTTTGTTTTTAAGTCA
3' ss Score
6.52
5' ss Seq
TAGGTATGG
5' ss Score
7.37
Exon sequences
Seq C1 exon
TTGTTACATGTCCGAGTATTAATTCTTTTACCTTGGAACATGGAAGATGGAGAATTGTGAATGGATCACATTATGAATACAAAACTAAGGTGGTTTTCAGCTGTGATCCTGGTTATCATGGACTTGGTCCTGCTTCTATTGAATGCCTTCCTAATGGTACTTGGAGTTGGAGAACTGAAAGACCATATTGCCAAA
Seq A exon
TCATCTCCTGTGGAGAATTGCCAACACCTCCAAATGGAAATAAGATTGGAACTCAAACTTCCTATGGCTCCACAGCCATATTCACGTGTGACTTGGGATTCATGCTTGTGGGTTCTGCTGTTCGGGAATGCCTTTCCTCTGGTCTGTGGAGTGGATCAGAAACCAGATGTCTAG
Seq C2 exon
CGGGTCACTGTGGAATTCCAGATCTCATTGTAAATGGTCAAGTCATTGGAGAAAATTATGGATATAGAGACACAGTTGTGTATCAGTGTAACCCTGGCTTTCGTCTGATTGGTTCTTCTGTGAGGATATGTCAGCAGGATCACAATTGGTCTGGTCAGCTCCCATCCTGTGTGC
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000004937-'58-66,'58-65,59-66
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
NonCoding
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGTTTTCAGCTGTGATCCTGGT
R:
CCAGACCAATTGTGATCCTGCT
Band lengths:
258-432
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]