DreEX6042876 @ danRer10
Exon Skipping
Gene
ENSDARG00000077905 | si:ch211-236p22.1
Description
si:ch211-236p22.1 [Source:ZFIN;Acc:ZDB-GENE-050419-118]
Coordinates
chr16:47729027-47744846:-
Coord C1 exon
chr16:47744652-47744846
Coord A exon
chr16:47737831-47738004
Coord C2 exon
chr16:47729027-47729200
Length
174 bp
Sequences
Splice sites
3' ss Seq
TCTATTGCCTTTCACTGCAGTCA
3' ss Score
7.12
5' ss Seq
TGGGTAATA
5' ss Score
4.95
Exon sequences
Seq C1 exon
TGGTGGTTTGTCCCAGTATTGGCTCCTTCACTCTGGATCACGGTAAATGGAGGATCGTCAATGGTTCACGCTATGAATACGGCACTAAAGTCGCTTTTACCTGCAATGCTGGATACTACCGGCTTGGCCCCGCCCACATTCACTGTACATCCAATGGGACGTGGAGCTGGAGGAATGAGCGACCTCGGTGCAAGG
Seq A exon
TCATTTCGTGCGGCGAGCTGCCCACTCCTCCTAATGGAAAGAAAATTGGGACGCAGACGACCTTTGGAGCAACAGCTATTTTTACCTGCAACTCTGGCTTCATACTGGTGGGCTCCACTGTACGGGAATGTCTGCCATCGGGTCTCTGGAGCGGGACGGAGACTCACTGCCTGG
Seq C2 exon
CCGGACACTGTGGCATTCCTGAACGGATCGTGAACGGTCAAGTGATCGGGGAAAACTTTGGCTACAGGGATACAGTGGTCTACCAGTGCAATCCGGGTTTCCGGCTCATCGGTTCCTCCGTGCGGATCTGCCAACAGGATCACAACTGGTCCGGGCAGCTGCCATCCTGCGTGT
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000077905-'54-53,'54-52,55-53=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.034 C2=0.000
Domain overlap (PFAM):
C1:
PF0279317=HRM=PD(11.8=9.1),PF0008415=Sushi=WD(100=92.4)
A:
PF0008415=Sushi=WD(100=91.5)
C2:
PF0008415=Sushi=WD(100=91.5)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGATCGTCAATGGTTCACGCT
R:
AAACCCGGATTGCACTGGTAG
Band lengths:
244-418
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]