HsaEX6082012 @ hg19
Exon Skipping
Gene
ENSG00000164796 | CSMD3
Description
CUB and Sushi multiple domains 3 [Source:HGNC Symbol;Acc:19291]
Coordinates
chr8:113308062-113317144:-
Coord C1 exon
chr8:113316950-113317144
Coord A exon
chr8:113314022-113314195
Coord C2 exon
chr8:113308062-113308235
Length
174 bp
Sequences
Splice sites
3' ss Seq
ATTTATTTATCATTTTAAAGTTA
3' ss Score
5.3
5' ss Seq
TAGGTACAG
5' ss Score
4.67
Exon sequences
Seq C1 exon
TTGTTACATGTCCAAGCATCAATTCCTTTATCTTGGAACATGGAAGATGGCGAATTGTGAATGGCTCCCATTATGAATACAAAACCAAAGTAGTTTTCAGCTGTGACCCTGGTTATCATGGACTAGGTCCTGCCTCCATCGAATGTCTTCCTAATGGTACTTGGAGTTGGAGAAATGAAAGACCATATTGCCAAA
Seq A exon
TTATTTCCTGTGGAGAACTACCTACACCTCCAAATGGAAATAAGATTGGAACTCAAACTTCATATGGCTCAACAGCTATCTTTACCTGCGACTTGGGATTCATGCTTGTGGGCTCTGCTGTAAGGGAATGCCTTTCCTCAGGTCTTTGGAGTGAATCTGAAACCAGATGCCTAG
Seq C2 exon
CGGGTCATTGTGGAATTCCAGAACTGATTGTGAATGGTCAAGTCATTGGAGAAAATTATGGATATAGAGACACAGTTGTATATCAATGTAATCCTGGTTTTCGATTGATTGGTTCTTCAGTGAGGATATGTCAACAGGATCACAATTGGTCTGGTCAGCTCCCATCCTGTGTGC
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000164796-'60-61,'60-60,61-61=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.034 C2=0.000
Domain overlap (PFAM):
C1:
PF0008415=Sushi=WD(100=92.4)
A:
PF0008415=Sushi=WD(100=91.5)
C2:
PF0008415=Sushi=WD(100=91.5)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTAGGTCCTGCCTCCATCGAA
R:
CAGGATGGGAGCTGACCAGA
Band lengths:
242-416
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)