MmuEX6053532 @ mm10
Exon Skipping
Gene
ENSMUSG00000022311 | Csmd3
Description
CUB and Sushi multiple domains 3 [Source:MGI Symbol;Acc:MGI:2386403]
Coordinates
chr15:47650099-47659200:-
Coord C1 exon
chr15:47659006-47659200
Coord A exon
chr15:47657507-47657680
Coord C2 exon
chr15:47650099-47650272
Length
174 bp
Sequences
Splice sites
3' ss Seq
TGTTTATTTTTGTTTATAAGTCA
3' ss Score
4.23
5' ss Seq
TAGGTACAG
5' ss Score
4.67
Exon sequences
Seq C1 exon
TTGTTACATGTCCAAGTATCAATTCCTTTACCTTGGATCATGGAAGATGGAGAATTGTGAATGGCTCACATTATGAATACAAAACTAAGGTGGTTTTCAGCTGTGATCCTGGTTATCATGGACTTGGCCCTGCTTCTATTGAATGCCTTCCTAATGGTACTTGGAGTTGGAGAACTGAAAGACCGTACTGCCAAA
Seq A exon
TCATCTCCTGTGGAGAGTTACCAACACCTCCAAATGGAAATAAGATTGGAACTCAAACTTCCTATGGCTCCACAGCCATCTTCACATGTGATTTGGGATTCATGCTTGTGGGCTCTGCTGTACGGGAATGCCTCTCTTCTGGTCTGTGGAGTGGATCAGAAACCAGATGTCTAG
Seq C2 exon
CGGGTCACTGTGGAATTCCAGAACTCATTGTGAATGGGCAAGTCATTGGAGAAAATTATGGATATAGAGACACAGTTGTATATCAGTGTAACCCTGGCTTTCGTCTGATTGGTTCTTCTGTGAGGATATGTCAGCAGGATCACAACTGGTCTGGTCAGCTCCCATCCTGTGTGC
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000022311-'103-71,'103-70,104-71
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.034 C2=0.000
Domain overlap (PFAM):
C1:
PF0008415=Sushi=WD(100=93.9)
A:
PF0008415=Sushi=WD(100=91.5)
C2:
PF0008415=Sushi=WD(100=91.5)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TATCATGGACTTGGCCCTGCT
R:
GAGCTGACCAGACCAGTTGTG
Band lengths:
243-417
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types