BtaEX6062830 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000038281 | CSMD3
Description
CUB and Sushi multiple domains 3 [Source:HGNC Symbol;Acc:HGNC:19291]
Coordinates
chr14:54240898-54251247:+
Coord C1 exon
chr14:54240898-54241022
Coord A exon
chr14:54248861-54248957
Coord C2 exon
chr14:54251143-54251247
Length
97 bp
Sequences
Splice sites
3' ss Seq
AGATAATTATTATTTCATAGGTG
3' ss Score
5.86
5' ss Seq
CAGGTAAAT
5' ss Score
8.76
Exon sequences
Seq C1 exon
TGCCCTGTGGTGGAATTTTAACTAAGCGCAAAGGGACTATTTTGTCTCCTGGATACCCTGAGCCTTATGACAACAATCTGAATTGTGTATGGAAGATCACAGTGCCAGAGGGAGCTGGCATTCAA
Seq A exon
GTGCAAGTTGTCAGCTTTGCTACAGAACATAATTGGGATTCTCTGGACTTTTATGATGGGGGAGACAACAATGCCCCAAGACTTGGAAGTTATTCAG
Seq C2 exon
GAACAACAATACCCCATCTTTTGAATAGTACATCTAATAATCTATATCTAAATTTTCAATCAGACATCAGTGTTTCTGCTGCAGGATTTCACCTTGAATACACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000038281-'31-34,'31-33,32-34=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0043115=CUB=PU(36.8=92.9)
A:
PF0043115=CUB=FE(30.2=100)
C2:
PF0043115=CUB=PD(31.1=91.7)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCCTGGATACCCTGAGCCTT
R:
TCAAGGTGAAATCCTGCAGCA
Band lengths:
177-274
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]