DreEX6074416 @ danRer10
Exon Skipping
Gene
ENSDARG00000077920 | CSMD3
Description
CUB and Sushi multiple domains 3 [Source:HGNC Symbol;Acc:HGNC:19291]
Coordinates
chr19:44763644-44773335:-
Coord C1 exon
chr19:44773211-44773335
Coord A exon
chr19:44769867-44769963
Coord C2 exon
chr19:44763644-44763748
Length
97 bp
Sequences
Splice sites
3' ss Seq
TTGTTTTCTCTGTTAATCAGATC
3' ss Score
7.99
5' ss Seq
CAGGTGAGC
5' ss Score
9.6
Exon sequences
Seq C1 exon
TGCCTTGTGGAGGGATTCTGACAATGCGAAAGGGGACGATTTTGTCCCCAGGATACCCGGAGCCCTACGATAACAACCTCAACTGCGTGTGGAAGGTGTCTGTTCCTGAGGGAGCTGGGATACAA
Seq A exon
ATCCAAGTTGTGAGTTTTGCCACTGAACACAACTGGGATTCCCTGGATTTCTATGATGGCGCAGACAACAATGCACCCAGACTGGGCAGCTATTCAG
Seq C2 exon
GGACCACCATTCCTCAGCTCCTGAATAGCACGTCTAATAACCTCTACCTGAACTTCGTGTCAGACATCAGCGTGTCCGCAGCAGGTTTCCATCTGGAATACACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000077920-'34-34,'34-33,35-34=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0043115=CUB=PU(36.8=90.7)
A:
PF0043115=CUB=FE(30.2=100)
C2:
PF0043115=CUB=PD(32.1=94.4)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GACAATGCGAAAGGGGACGAT
R:
CACGCTGATGTCTGACACGAA
Band lengths:
180-277
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]