MmuEX6053516 @ mm10
Exon Skipping
Gene
ENSMUSG00000022311 | Csmd3
Description
CUB and Sushi multiple domains 3 [Source:MGI Symbol;Acc:MGI:2386403]
Coordinates
chr15:47731926-47741269:-
Coord C1 exon
chr15:47741145-47741269
Coord A exon
chr15:47733410-47733506
Coord C2 exon
chr15:47731926-47732030
Length
97 bp
Sequences
Splice sites
3' ss Seq
CACAAACTGTTATTTTATAGGTA
3' ss Score
8.72
5' ss Seq
CAGGTAAAA
5' ss Score
8.59
Exon sequences
Seq C1 exon
TGCCTTGTGGGGGAATTTTAACTAAGCGCAAAGGGACTATTTTGTCTCCTGGATATCCTGAGCCTTATGACAACAATTTGAATTGTGTTTGGAAGATCACAGTGCCAGAGGGAGCTGGAATTCAA
Seq A exon
GTACAAGTAGTTAGCTTTGCTACGGAGCACAACTGGGATTCTCTGGACTTCTATGATGGGGGAGACAACAATGCACCGAGACTTGGAAGTTATTCAG
Seq C2 exon
GAACAACAATACCGCATCTTCTCAATAGTACATCTAATAATTTATACCTAAACTTCCAATCAGACATCAGTGTCTCTGCTGCAGGATTTCATCTTGAGTACACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000022311-'84-52,'84-51,85-52=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0043115=CUB=PU(36.8=92.9)
A:
PF0043115=CUB=FE(30.2=100)
C2:
PF0043115=CUB=PD(31.1=91.7)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTCTCCTGGATATCCTGAGCC
R:
TGAAATCCTGCAGCAGAGACAC
Band lengths:
174-271
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types