RnoEX6032195 @ rn6
Exon Skipping
Gene
ENSRNOG00000004937 | AABR07057765.1
Description
NA
Coordinates
chr7:86845399-86854815:-
Coord C1 exon
chr7:86854691-86854815
Coord A exon
chr7:86846851-86846947
Coord C2 exon
chr7:86845399-86845503
Length
97 bp
Sequences
Splice sites
3' ss Seq
CAGAGACTGTTTTCTCATAGGTA
3' ss Score
5.8
5' ss Seq
CAGGTAAAA
5' ss Score
8.59
Exon sequences
Seq C1 exon
TGCCTTGTGGGGGAATTTTAACTAAGCGCAAAGGGACTATTTTGTCTCCTGGATATCCTGAGCCTTATGACAACAATTTGAATTGTGTTTGGAAGATCACAGTGCCAGAGGGAGCTGGCATTCAA
Seq A exon
GTACAAATTGTTAGCTTTGCTACGGAACACAACTGGGACTCTCTGGACTTCTATGATGGGGGAGACAACAATGCACCGAGACTGGGAAGTTATTCAG
Seq C2 exon
GGACAACAATACCTCATCTTCTCAATAGCACATCTAATAATTTATACCTAAATTTCCAATCAGACATCAGTGTCTCTGCTGCAGGATTTCATCTTGAATACACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000004937-'39-47,'39-46,40-47=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
NonCoding
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTCTCCTGGATATCCTGAGCC
R:
TGAAATCCTGCAGCAGAGACAC
Band lengths:
174-271
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]