GgaEX6022122 @ galGal3
Exon Skipping
Gene
ENSGALG00000016111 | CSMD3
Description
NA
Coordinates
chr2:139079502-139084492:-
Coord C1 exon
chr2:139084368-139084492
Coord A exon
chr2:139080711-139080807
Coord C2 exon
chr2:139079502-139079606
Length
97 bp
Sequences
Splice sites
3' ss Seq
TCTTTTTTTTTTTTTTTTAGGTT
3' ss Score
13.5
5' ss Seq
CAGGTGACA
5' ss Score
5.49
Exon sequences
Seq C1 exon
TGCCCTGTGGTGGAATTTTAACAAAGCGCAAGGGGACCATTTTGTCTCCTGGTTACCCTGAGCCTTATGACAACAATTTGAATTGTGTGTGGAAAATCAACGTACCAGAAGGAGCTGGGATTCAA
Seq A exon
GTTCAAGTGGTGAGTTTTGCTACAGAACACAACTGGGATTCTTTAGACTTTTATGATGGAGCTGACAACAATGCTCCAAGGCTTGGAAGTTATTCAG
Seq C2 exon
GAACAACTATACCTCCACTTCTAAACAGCACGTCAAATAATCTGTACCTAAACTTTCAGTCTGATATCAGTGTATCTGCTGCTGGATTTCATCTTGAGTATACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000016111-'36-38,'36-37,37-38=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0043115=CUB=PU(36.8=92.9)
A:
PF0043115=CUB=FE(30.2=100)
C2:
PF0043115=CUB=PD(31.1=91.7)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTCTCCTGGTTACCCTGAGC
R:
ACTCAAGATGAAATCCAGCAGCA
Band lengths:
182-279
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]