BtaEX6062905 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000014051 | ANGPT1
Description
angiopoietin-1 precursor [Source:RefSeq peptide;Acc:NP_001070265]
Coordinates
chr14:59137214-59338127:+
Coord C1 exon
chr14:59137214-59137240
Coord A exon
chr14:59320387-59320542
Coord C2 exon
chr14:59338006-59338127
Length
156 bp
Sequences
Splice sites
3' ss Seq
TTGCCCTTCATCTCTTGCAGATT
3' ss Score
12.06
5' ss Seq
CAGGTATGT
5' ss Score
9.8
Exon sequences
Seq C1 exon
GAAAATTATACTCAGTGGCTGCAAAAA
Seq A exon
ATTGAGAATTACATTGTGGAAAATATGAAGTCGGAGATGGCTCAGATACAGCAGAATGCAGTTCAGAACCACACGGCCACCATGCTCGAGATAGGGACCAGCCTCCTCTCTCAGACCGCAGAGCAGACCAGAAAGCTGACAGATGTAGAGACCCAG
Seq C2 exon
GTACTAAATCAAACATCTCGACTTGAAATACAACTGCTGGAGAATTCATTATCAACCTACAAGCTAGAGAAACAACTTCTTCAACAGACAAATGAAATCTTAAAGATTCATGAGAAAAACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000014051-'0-2,'0-1,3-2=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.250 C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAAAATTATACTCAGTGGCTGCA
R:
TCATTTGTCTGTTGAAGAAGTTGT
Band lengths:
122-278
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]