GgaEX0023720 @ galGal3
Exon Skipping
Gene
ENSGALG00000016083 | Q70UN6_CHICK
Description
NA
Coordinates
chr2:137042618-137131960:-
Coord C1 exon
chr2:137131867-137131960
Coord A exon
chr2:137045766-137045921
Coord C2 exon
chr2:137042618-137042739
Length
156 bp
Sequences
Splice sites
3' ss Seq
CAATCTTTTCTCTTTTACAGCTT
3' ss Score
10.91
5' ss Seq
CAGGTATGT
5' ss Score
9.8
Exon sequences
Seq C1 exon
GAGAGATGCTCCTCACGTGGAACAGGATTTCTCTTTCCAGAAACTGCAGCATCTGGAACATGTGATGGAAAACTACACACAGTGGCTGCAAAAA
Seq A exon
CTTGAGAGTTACATTGTGGAAAACATGAAATCGGAGATGGTGCAGCTGCAGCAGAATGCTGTGCAGAACCACACTGCCACCATGCTTGAGATAGGGACCAGCCTCCTCAGCCAGACAGCAGAGCAGACAAGAAAACTCACGGATGTTGAAACGCAG
Seq C2 exon
GTGCTAAATCAAACATCCAGACTTGAAATTCAGCTACTAGAAAATTCACTGTCAACCTACAAGCTAGAAAAACAGCTGCTACAACAGACAAATGAAATCCTGAAAATTCATGAGAAAAACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000016083-'0-1,'0-0,1-1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.212 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGAGATGCTCCTCACGTGGAA
R:
TGAATTTTCAGGATTTCATTTGTCTG
Band lengths:
203-359
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]