HsaEX6081857 @ hg19
Exon Skipping
Gene
ENSG00000154188 | ANGPT1
Description
angiopoietin 1 [Source:HGNC Symbol;Acc:484]
Coordinates
chr8:108348378-108507223:-
Coord C1 exon
chr8:108506791-108507223
Coord A exon
chr8:108359170-108359325
Coord C2 exon
chr8:108348378-108348499
Length
156 bp
Sequences
Splice sites
3' ss Seq
TTGTTCTTTATCTCTTGCAGCTT
3' ss Score
11.22
5' ss Seq
CAGGTACAC
5' ss Score
7.29
Exon sequences
Seq C1 exon
TATTACTTCTATTTTGATTCCAAGTAGTTGCCATAGGAAGAAGCAACACCCTGCAGAAACTGAGGCTATCAGTGTATGTAGGTGAAATTAATTTATCCATTTATTTGGCAAAATAATTAATCAAAGCATAGTGATTATTATGCAGCTCATGGCATCGCTATCAGGAAAGGTTTTGAGGCAGAATAGATGTGTTATCAACTCTAAATGAAGCTATATGATAATTATGTTAATCCATCACCTTCCATGAAGGGAAACCTCCTTCCTCAACTTTTCTGGTCTTGCAACTGAACAGGATGAGAAGCAAGGCATGCAAGGGGGCAAATGATTTGTGGGTCACCATAAATACTGGAACTGTTATGGCACTGCTTTCTTGATGTGATGGATTTAATTCAAAGAAATCAACTTTCCATAATCACTTGTCGATTAAAATGAG
Seq A exon
CTTGAGAATTACATTGTGGAAAACATGAAGTCGGAGATGGCCCAGATACAGCAGAATGCAGTTCAGAACCACACGGCTACCATGCTGGAGATAGGAACCAGCCTCCTCTCTCAGACTGCAGAGCAGACCAGAAAGCTGACAGATGTTGAGACCCAG
Seq C2 exon
GTACTAAATCAAACTTCTCGACTTGAGATACAGCTGCTGGAGAATTCATTATCCACCTACAAGCTAGAGAAGCAACTTCTTCAACAGACAAATGAAATCTTGAAGATCCATGAAAAAAACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000154188-'1-4,'1-2,4-4=AN
Average complexity
A_C2
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.385 C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCCTCAACTTTTCTGGTCTTGCA
R:
GCTTCTCTAGCTTGTAGGTGGA
Band lengths:
246-402
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)