GgaEX0023720 @ galGal4
Exon Skipping
Gene
ENSGALG00000016083 | ANG-1
Description
angiopoietin-1 precursor [Source:RefSeq peptide;Acc:NP_001186376]
Coordinates
chr2:131034004-131114196:-
Coord C1 exon
chr2:131113258-131114196
Coord A exon
chr2:131037153-131037308
Coord C2 exon
chr2:131034004-131034125
Length
156 bp
Sequences
Splice sites
3' ss Seq
CAATCTTTTCTCTTTTACAGCTT
3' ss Score
10.91
5' ss Seq
CAGGTATGT
5' ss Score
9.8
Exon sequences
Seq C1 exon
AAGGAAGCTATTCTCATAGTTAAATTTAAAAGAAAATAACAATTTATCCAAGCTTGATTATTAAAGTGTGCTTTTCCAGTCCTTTTTTCTAGAGACTTTAAGAGAAATTAGGAGGAAAAAAAAAAAGAAAAAGAAAAAAAAAAGAACTATAGAAAGAGGAAGAGAAAGTTTTTCTAAGAGTGGGAAAGGAAAGTAATAGTAACATGTCAGTTTTCCTTTCCTTTGCTTTTCTGGCAGCACTCCTTGCTCATATAGGCTGTACCACTCAGCGCCGGGGTCCGGAAGCCAGTGGGAGAAGATTTAACCGGATTCAGCATGGGCAGTGCACCTATACTTTCATTCTGCCAGAACAGGACGGGAACTGTCGTGAAAGCACGACAGACCAGTACAACACTAACGCTCTTCAGAGAGATGCTCCTCACGTGGAACAGGATTTCTCTTTCCAGAAACTGCAGCATCTGGAACATGTGATGGAAAACTACACACAGTGGCTGCAAAAA
Seq A exon
CTTGAGAGTTACATTGTGGAAAACATGAAATCGGAGATGGTGCAGCTGCAGCAGAATGCTGTGCAGAACCACACTGCCACCATGCTTGAGATAGGGACCAGCCTCCTCAGCCAGACAGCAGAGCAGACAAGAAAACTCACGGATGTTGAAACGCAG
Seq C2 exon
GTGCTAAATCAAACATCCAGACTTGAAATTCAGCTACTAGAAAATTCACTGTCAACCTACAAGCTAGAAAAACAGCTGCTACAACAGACAAATGAAATCCTGAAAATTCACGAGAAAAACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000016083-'0-4,'0-3,3-4
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.212 A=0.231 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CATTCTGCCAGAACAGGACGG
R:
TGTCTGTTGTAGCAGCTGTTT
Band lengths:
253-409
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]