MmuEX6053402 @ mm10
Exon Skipping
Gene
ENSMUSG00000022309 | Angpt1
Description
angiopoietin 1 [Source:MGI Symbol;Acc:MGI:108448]
Coordinates
chr15:42512284-42676977:-
Coord C1 exon
chr15:42676165-42676977
Coord A exon
chr15:42523504-42523659
Coord C2 exon
chr15:42512284-42512405
Length
156 bp
Sequences
Splice sites
3' ss Seq
TTGTCCTTTATCTCTTTCAGCTT
3' ss Score
10.79
5' ss Seq
CAGGTATGT
5' ss Score
9.8
Exon sequences
Seq C1 exon
ATTACAGTTAAAATTTTTTAAAGTAACGCTTTTTTAGAACAAAGCTAACAAATGGCTAGTTTTCTGTGGATCTTCTTCAAACGCTTTCTTTAACGGGGAAAGAGTCAAACAAGCAGTTTTACCTGAAATAAAGAACTAGTTTAAAGGTCAGAAGAGAAGAGCAAGCTTTGCAGGAGGCACGGAAGGCAAGCGCTGGCAGTACAATGACAGTTTTCCTTTCCTTTGCATTCTTCGCTGCCATTCTGACTCACATAGGGTGCAGCAACCAGCGCCGAAATCCAGAAAACGGAGGGAGAAGATATAACCGGATTCAACATGGGCAATGTGCCTACACTTTCATTCTTCCAGAACACGACGGGAACTGCCGTGAGAGTGCGACAGAGCAGTACAACACCAACGCTCTGCAAAGGGATGCTCCACACGTGGAGCCGGATTTCTCTTCCCAGAAACTTCAGCATCTGGAGCATGTGATGGAAAATTATACTCAGTGGCTGCAAAAA
Seq A exon
CTTGAGAATTACATTGTGGAAAATATGAAGTCGGAGATGGCCCAGATACAACAGAATGCTGTTCAAAACCACACGGCCACCATGCTTGAGATAGGAACCAGTCTCTTATCTCAGACTGCAGAGCAGACCCGAAAGCTGACAGATGTTGAGACCCAG
Seq C2 exon
GTACTAAATCAAACATCCCGACTTGAAATACAACTGCTAGAGAATTCATTATCAACATACAAGCTAGAGAAGCAACTTCTCCAACAGACAAATGAAATTCTGAAGATTCACGAAAAAAACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000022309_MULTIEX2-2/2=C1-C2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.374 A=0.385 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
ENSMUST00000022921fB5770
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTTCCAGAACACGACGGGAAC
R:
TGTCTGTTGGAGAAGTTGCTTC
Band lengths:
249-405
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types