DreEX0013049 @ danRer10
Exon Skipping
Gene
ENSDARG00000030364 | angpt1
Description
angiopoietin 1 [Source:ZFIN;Acc:ZDB-GENE-010817-1]
Coordinates
chr19:47297510-47366372:-
Coord C1 exon
chr19:47365915-47366372
Coord A exon
chr19:47300600-47300755
Coord C2 exon
chr19:47297510-47297631
Length
156 bp
Sequences
Splice sites
3' ss Seq
CTTTTTGACTTGTCTCACAGATT
3' ss Score
9.53
5' ss Seq
CAGGTATAT
5' ss Score
7.88
Exon sequences
Seq C1 exon
GACGGGATCAACAATGCGTCCGGACGTGATCCCCACGTGTCCGTCCCAGCATCCGCACTCAATCTGATCCAACATTTTAGTTAGTTCTTGATATATTTGTGAGTTTTCCGTCCCATCGGGCTCCTGCCATGTGGTGGGGTTGCTTGTTTCTGGCAGCGCTGCTGGTGGTTGCAGATTGTGGAGGAGTTGAGCAGAAAACAGACGGACTCAGGAGCTCCACGCCGAAATCCAACAGCAGCAGCGGTCGGAGGTATCACCGGATCCAGCATGGACAGTGCAGCTACACGTTTATCCTCCCGGAGAGCGATGGAAACACTTGTCGAGAGTTTAAATCGGGCACGGCGTACAATGCCAATGCATTACAGCGGGACGCTCCTCAACCCGAAGCCGACTTGTCCAACCAGAAGATCCAGCAGCTGGAGCACGTCATGGAGAACTACACGCAGTGGCTACAGAAG
Seq A exon
ATTGAGAACTACATCAAAGACAACATGAAGACGGAGATGGTGCAGCTACAACAGAGCGCCGTCCACAACCACACGGCAGCCATGCTGGAAATGGGCACCAGTCTTCTGTCCCAAACGGCAGAACAGACGCGAAAACTGACCGACGTGGAGACCCAG
Seq C2 exon
GTTTTGAATCAGACGTCGCGGTTGGAAATTCAGCTGCTGGAGAACTCGCTGTCCACCAATAAGCTGGAGAAGCAGCTCATGATACAGATCAATGAAATCAACAAGATTCATGACAAGAATGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000030364_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.345 A=0.635 C2=0.049
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGACAGTGCAGCTACACGTTT
R:
GCTTATTGGTGGACAGCGAGT
Band lengths:
253-409
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]