BtaEX6063091 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000032544 | SPAG1
Description
sperm associated antigen 1 [Source:HGNC Symbol;Acc:HGNC:11212]
Coordinates
chr14:66320462-66328329:-
Coord C1 exon
chr14:66328200-66328329
Coord A exon
chr14:66321916-66322080
Coord C2 exon
chr14:66320462-66320833
Length
165 bp
Sequences
Splice sites
3' ss Seq
CTCTGCCCTCCTGCTTTCAGAAT
3' ss Score
11.31
5' ss Seq
GAGGTACGT
5' ss Score
10.2
Exon sequences
Seq C1 exon
CAGAGCCCTCTGTTACTTGAAGCTGGGCCAATTTGAAGAGGCAAAGCAGGACTGTGAACAGGCCCTTCAGATGGATCACGGGAATGTGAAAGCTTGCTATAGACGAGCCCTTGCTCACAAAGGGCTCAAG
Seq A exon
AATTATCAGAAAAGTTTAAACGATCTCAATAAAGTTCTCCTGCTAGACCCAAGTATTGTTGAGGCAAAAATGGAACTGGAAGAGGTAACCAGAATCCTTAATATTAAGGATAATACAGCATCATTCAACAAAGAAAAGGAGAGAAGGAAAATTGAGATTCAAGAG
Seq C2 exon
GTGAGTGAAGGCCATCGGGAAGAGCCTGAGAGGACCTCGAAGGAGGTCCCCATGGATGGCCTTGCTTCTGAGAATGGGGACACCAGCAACGGGCCACAAGAGCTCTATGAGAAACTGCTGATCTCCAAGCCTAACAATGCCTACGAATTTGGTCAGGTTATAAACGCCATCAGCACGAGAAAAGATCAAGGAGCCTGCGCACACCTGCTAGCCATCACTGAACCGAAAGATTTGCCAGTGTTGTTAAGTAACAAACTTGAAGGGGACACATTCCTCCTCCTCCTCCAGTCTCTGAAAAGTCATCTTATTGATAAAGATCCCTCCTTGGTGTATCAGCATCTTTTATATCTGAGCAAAGCAGAAAGGTTTAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000032544-'26-31,'26-29,27-31=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.127 C2=0.274
Domain overlap (PFAM):
C1:
PF134141=TPR_11=PD(37.7=59.1),PF0051523=TPR_1=PU(41.2=31.8)
A:
PF0051523=TPR_1=PD(52.9=32.7)
C2:
PF138771=RPAP3_C=PU(86.5=66.9)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTTGCTCACAAAGGGCTCAA
R:
CAGTGATGGCTAGCAGGTGTG
Band lengths:
242-407
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]