GgaEX7002518 @ galGal4
Exon Skipping
Gene
ENSGALG00000016037 | SPAG1
Description
sperm associated antigen 1 [Source:HGNC Symbol;Acc:HGNC:11212]
Coordinates
chr2:128203795-128208792:+
Coord C1 exon
chr2:128203795-128203927
Coord A exon
chr2:128206149-128206313
Coord C2 exon
chr2:128208421-128208792
Length
165 bp
Sequences
Splice sites
3' ss Seq
AGTTTCCCTTTTCCTGACAGAGC
3' ss Score
8.53
5' ss Seq
GAGGTACAT
5' ss Score
6.75
Exon sequences
Seq C1 exon
TGTTAGAGCTCTCTGTTACTTGAAACTGCATAAATATGAAGAGGCTAAGCAAGATTGTGATCATGTTCTTCAAATAGAAGATTGTAATATTAAAGCTTTTTACAGAAGAGCACTAGCATACAAAGGATTACAG
Seq A exon
AGCTATCAAGCCAGTGTTGATGATCTCAAGAAAGTACTTCTAATAGATCCAAATGTTCTTGAAGCAAAAAAGGAACTGGAGGAGATAACCCAACTGCTCAGCCTTGGCGGCGTTGCTGTTGCTGACTGTCAACAAAAGCAAAGGAAGAAAATAACCATACAAGAG
Seq C2 exon
GTAACTGATGAACAGGAAGAGGGGCAGCTTGAGACAGCAGAAGATGTTGTGACTGACAATCTTAGCTCTAAAGAAGCGGTTCAGAAGTGTGTGCCATCAAGGACCTGTGAAAAACTGACCATTTCTGAACCATCCAATGCCTATGATTTTGGTCAGATTGTAAATGCAGTGAATGCCAGTAAGGATCAATCTGCTTGTGCAGATCTTCTAACAATTACTGATCCAAAAAAACTGCCAGTGCTGCTAAGTAACAAACTTGAAGGAGAGATCTTTTTGATTTTCATCCAGTCATTGGCACATTACATCCTTGGAAAAGATCCTGGCCTCGTATATCAGCATCTTTTCTACTTGAGCAAAGCAGAAAGATTTAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000016037-'23-29,'23-28,24-29=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.018 C2=0.056
Domain overlap (PFAM):
C1:
PF134141=TPR_11=PD(38.6=60.0),PF0051523=TPR_1=PU(41.2=31.1)
A:
PF0051523=TPR_1=PD(52.9=32.7)
C2:
PF138771=RPAP3_C=PU(86.5=66.9)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
AGAGCTCTCTGTTACTTGAAACTGC
R:
TTTTCACAGGTCCTTGATGGCA
Band lengths:
242-407
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]