RnoEX0084992 @ rn6
Exon Skipping
Gene
ENSRNOG00000010078 | Spag1
Description
sperm associated antigen 1 [Source:RGD Symbol;Acc:1310702]
Coordinates
chr7:75048366-75053386:+
Coord C1 exon
chr7:75048366-75048492
Coord A exon
chr7:75051898-75052041
Coord C2 exon
chr7:75053042-75053386
Length
144 bp
Sequences
Splice sites
3' ss Seq
CCTATGAACTTATTTTTTAGAAT
3' ss Score
7.94
5' ss Seq
GAGGTATTT
5' ss Score
7.63
Exon sequences
Seq C1 exon
GGCTCTCTGTTACTTGAAGCTGGGACAGTTTGAAGAGGCAAAGCTGGACTGTGACAAGGCACTTCAGATAGACAGCAAGAATGTGAAAGCCTCTTACAGACTCGAGCTCGCCCAGAAAGGACTCGAG
Seq A exon
AATTGCCGGGAAAGAGTGGCGGATCCCAGTCAGGTTGTCCTCCTAAGCCCAGATTCCAGTGAAGCAGCCAGGCACCTGGACACTAAGAATGACACAGCACCTCCCAGCAGAGAGAGGGAGAGGAGGAGAATTGAAATCCAAGAG
Seq C2 exon
GTGGATGACAGCAGTGATGAGGAGCCTGAGCGGCCCGCAGAGGCCTCTGCCGTGGAAGAGGGGTGGTCTGCAGAACGAGCCGGGAAGATCGAGGTGTGCAAGCCTAGGAACGCCTATGAGTTCGGGCAGGTCCTGAGCACTATCAGCGCCAGGAAAGACGAAGAGGCCTGTGCACAGCTTTTAGTCTTCACTGCTCCCCAAGACCTGCCTGTGTTGCTAAGTAACAAACTGGAAGGGGACATGCTCCTCCTCATCATGCAGTCACTGAAAAGTCACCTTGTGGCCAAGGACCCCTCACTGGTGTGCAAGCATCTCCTGTATCTGAGCAAAGCAGAGAGGTTTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000010078-'28-24,'28-22,31-24
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.722 C2=0.177
Domain overlap (PFAM):
C1:
PF134141=TPR_11=PD(36.8=58.1)
A:
NO
C2:
PF138771=RPAP3_C=PU(86.5=72.2)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAAGCTGGACTGTGACAAGGC
R:
CGTCTTTCCTGGCGCTGATAG
Band lengths:
248-392
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]