DreEX0074617 @ danRer10
Exon Skipping
Gene
ENSDARG00000004017 | spag1a
Description
sperm associated antigen 1a [Source:ZFIN;Acc:ZDB-GENE-030131-9443]
Coordinates
chr19:12087223-12098914:+
Coord C1 exon
chr19:12087223-12087349
Coord A exon
chr19:12087520-12087646
Coord C2 exon
chr19:12098165-12098914
Length
127 bp
Sequences
Splice sites
3' ss Seq
AGTTTTGTTTTCTCTCACAGGAT
3' ss Score
10.61
5' ss Seq
AAGGTAAAT
5' ss Score
8.88
Exon sequences
Seq C1 exon
AGCGCTGTGCTTTCTCAAGCTGGAACGTTTCGCAGAAGCCAAACAGGACTGTGATTCTGCACTTCAGATGGAGCCAAAGAACAAGAAAGCGTTTTATAGACGAGCACTGGCACACAAAGGCTTGAAG
Seq A exon
GATTACCTGTCAGCCAGCACTGATTTACAGGAAGTACTGCAGTTGGATCCAAATGTGCAGGAGGCCGAGCAGGAGCTGGAGATGGTCACTAACCTGCTAAGAGAAAGTCTATTGGCTAATGCTCAAG
Seq C2 exon
GTTGACAGCCAAGCAATAAATGATGAGATGAACAGAGATCTGCAGGAAGAACAAACCCTCTTATCATTAAAGCCAGACACAGCGGATCCACCGAGCCTGAGACTCCCAGCTCAGAGATGCCAGCGTCCCACAGCGAGGGTCCATTCATCTCTGTGCAGACCGTCATGCGCCGCAACTAAAGTTTCCCTTCCAGCAAACCCTCATCTCACGTTCTCCTAGGAATATTGTGTCTGATGCAATGCTGACTATGCAAAGCATGCAAAACTGTTCATACTCTCTAACACAGGCTTCAATAGGCACGTGTGAGCATGGCACGGAAGGGAAGCGCGTAATAGGATTTTTTCAGTTATGACGGGATGGTTAATGTGTATATGAGAGAGAATGTGCCTTTCATGAGAAGCTCTGGCTCACGTATTGAGTGATTTAACACTCTCAGATGAAATTGTATAGAAAGATTTTAATTTGCTACATTAAAAATGTCTCATTTCTCAGGATTTAAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000004017-'5-7,'5-6,6-7
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.047 A=0.047 C2=0.000
Domain overlap (PFAM):
C1:
PF134141=TPR_11=PD(35.7=58.1),PF0051523=TPR_1=PU(39.4=30.2)
A:
PF0051523=TPR_1=PD(54.5=41.9)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCAGAAGCCAAACAGGACTGT
R:
GATGAATGGACCCTCGCTGTG
Band lengths:
245-372
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]