BtaEX6063490 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000013369 | COL14A1
Description
collagen, type XIV, alpha 1 [Source:HGNC Symbol;Acc:HGNC:2191]
Coordinates
chr14:83938741-83947920:+
Coord C1 exon
chr14:83938741-83938905
Coord A exon
chr14:83941923-83942084
Coord C2 exon
chr14:83947769-83947920
Length
162 bp
Sequences
Splice sites
3' ss Seq
CCCTGTCGTCCCCAACGCAGGGG
3' ss Score
7.45
5' ss Seq
AAGGTACGC
5' ss Score
10.4
Exon sequences
Seq C1 exon
GTCTTGCTTTGAATTACATTTTTGAAAACAGTTTTAAACCGGAAGCGGGAGCAAGGACTGGAGTGTCCAAAATTGGCATTTTAATCACAGACGGAAAGTCCCAAGATGATATCATTCCACCATCCAGAAACCTTCGTGAATCTGGTGTAGAGCTGTTTGCCATAG
Seq A exon
GGGTGAAAAACGCGGACGAGAAGGAGCTGCAGGAGATCGCCTCCGAGCCGGACAGCACGCACGTGTACAACGTGGCCGAGTTTGACCTGATGCACACGGTTGTGGAGAGCCTCACGAGGACCGTGTGCTCCAGGGTGGAGGAGCAGGACCGCGAGATCAAAG
Seq C2 exon
CCTCAGCCCTTGCCACCGTGGGGCCGCCTACAGAACTGATGACTTCTGAAGTCACTGCCAGGAGCTTTATGGTTAACTGGACTCATGCCCCCGGAAAAGTGGAAAAATACAGAATCGTGTATTACCCTACCAGGGGTGGCAAACCAGAGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000013369-'8-17,'8-15,9-17=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.065 A=0.176 C2=0.098
Domain overlap (PFAM):
C1:
PF0009223=VWA=FE(31.8=100)
A:
PF0009223=VWA=PD(21.4=67.3)
C2:
PF0004116=fn3=PU(53.8=84.3)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGTTTTAAACCGGAAGCGGGA
R:
TTTTTCCACTTTTCCGGGGGC
Band lengths:
243-405
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]