MmuEX6053672 @ mm9
Exon Skipping
Gene
ENSMUSG00000022371 | Col14a1
Description
collagen, type XIV, alpha 1 [Source:MGI Symbol;Acc:MGI:1341272]
Coordinates
chr15:55197604-55211206:+
Coord C1 exon
chr15:55197604-55197768
Coord A exon
chr15:55204127-55204288
Coord C2 exon
chr15:55211055-55211206
Length
162 bp
Sequences
Splice sites
3' ss Seq
CCTGTTATCCTCAATGGCAGGGG
3' ss Score
6.58
5' ss Seq
AAGGTAAGA
5' ss Score
10.57
Exon sequences
Seq C1 exon
GTCTTGCTTTGAACTTTATTTTTGAGAATAGCTTTAAACCAGAAGCAGGATCGAGGAGTGGAGTTTCCAAGATTGGCATTTTGATCACAGATGGAAAATCCCAGGATGATATTATCCCACCATCTAGAAACCTCCGTGAGTCTGGTGTAGAGCTGTTTGCCATAG
Seq A exon
GGGTTAAAAATGCCGACCTGAGTGAGCTGCAGGAGATCGCCTCTGAGCCAGACAGCACCCATGTGTACAATGTTGCTGAGTTCGACCTGATGCACACAGTGGTGGAGAGCCTGACCCGGACTGTATGCTCTAGAGTGGAAGAGCAGGACAAGGAGATTAAAG
Seq C2 exon
CCTCAGCCCTTGCCACCATCGGGCCACCTACAGAGCTGATCACTTCTGAAGTCACTGCCAGGAGCTTTATGGTTAACTGGACTCAGTCCCCAGGAAAAGTGGAAAAATACAGAGTTGTGTATTATCCCACCAGAGGCGGAAAGCCGGAGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000022371-'7-9,'7-8,8-9=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.071 A=0.055 C2=0.059
Domain overlap (PFAM):
C1:
PF0009223=VWA=FE(31.8=100)
A:
PF0009223=VWA=PD(21.4=67.3)
C2:
PF0004116=fn3=PU(53.8=84.3)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGATCGAGGAGTGGAGTTTCC
R:
CGCCTCTGGTGGGATAATACAC
Band lengths:
256-418
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: