MmuEX6053672 @ mm10
Exon Skipping
Gene
ENSMUSG00000022371 | Col14a1
Description
collagen, type XIV, alpha 1 [Source:MGI Symbol;Acc:MGI:1341272]
Coordinates
chr15:55366049-55379651:+
Coord C1 exon
chr15:55366049-55366213
Coord A exon
chr15:55372572-55372733
Coord C2 exon
chr15:55379500-55379651
Length
162 bp
Sequences
Splice sites
3' ss Seq
CCTGTTATCCTCAATGGCAGGGG
3' ss Score
6.58
5' ss Seq
AAGGTAAGA
5' ss Score
10.57
Exon sequences
Seq C1 exon
GTCTTGCTTTGAACTTTATTTTTGAGAATAGCTTTAAACCAGAAGCAGGATCGAGGAGTGGAGTTTCCAAGATTGGCATTTTGATCACAGATGGAAAATCCCAGGATGATATTATCCCACCATCTAGAAACCTCCGTGAGTCTGGTGTAGAGCTGTTTGCCATAG
Seq A exon
GGGTTAAAAATGCCGACCTGAGTGAGCTGCAGGAGATCGCCTCTGAGCCAGACAGCACCCATGTGTACAATGTTGCTGAGTTCGACCTGATGCACACAGTGGTGGAGAGCCTGACCCGGACTGTATGCTCTAGAGTGGAAGAGCAGGACAAGGAGATTAAAG
Seq C2 exon
CCTCAGCCCTTGCCACCATCGGGCCACCTACAGAGCTGATCACTTCTGAAGTCACTGCCAGGAGCTTTATGGTTAACTGGACTCAGTCCCCAGGAAAAGTGGAAAAATACAGAGTTGTGTATTATCCCACCAGAGGCGGAAAGCCGGAGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000022371-'1-17,'1-9,8-17=AN
Average complexity
A_C3
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.071 A=0.055 C2=0.059
Domain overlap (PFAM):
C1:
PF0009223=VWA=FE(31.8=100)
A:
PF0009223=VWA=PD(21.4=67.3)
C2:
PF0004116=fn3=PU(53.8=84.3)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGCTGTTGCACCTGATGTAAGA
R:
AGTCATCAATTGATCCTCACCA
Band lengths:
218-380
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types