DreEX0022963 @ danRer10
Exon Skipping
Gene
ENSDARG00000005762 | col14a1a
Description
collagen, type XIV, alpha 1a [Source:ZFIN;Acc:ZDB-GENE-030131-9889]
Coordinates
chr16:14820282-15038124:+
Coord C1 exon
chr16:14820282-14820403
Coord A exon
chr16:14911389-14911550
Coord C2 exon
chr16:15037981-15038124
Length
162 bp
Sequences
Splice sites
3' ss Seq
TGTATACCGCATGTGTGTAGGTG
3' ss Score
4.97
5' ss Seq
AACGTGAGT
5' ss Score
9.54
Exon sequences
Seq C1 exon
GTGCGGGGCAAGCATCACTCACTTGGCTGTAAGGATGCAGGTGTCGGGATCCAGGATTAAGCTGTGGTGTCCGCTTATCTCGCTGGCACTGATTCAGTTTCTTGCCCCTGTTTCAGCTCAAG
Seq A exon
GTGTGAAGAATGCTGATGAAAATGAGCTGAAGGCCATTGCGTCTGAACCAGAGGACACACATGTTTATAATGTGGCTGACTTCAGTATTATGGGCACCATAGTGGAAGGTTTGACCAGGACGGTGTGTGATGGAGTGGAGCAACAGGACAAAGAAATTAAAC
Seq C2 exon
GTCGAGCCATCAAGCATGTCAAGGAGGCCATCTTTTCTGAGGATGCGGGTGTGAGGAGAGGCATCCCGAAAGTGCTGGTTGTGCTCACCGACGGCCGCTCTCAGGATGATGTCAACAAGATCTCCAAAGAGATGCAGATGGAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000005762_MULTIEX1-7/25=C1-C2
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.273 C2=0.041
Domain overlap (PFAM):
C1:
PF0004116=fn3=PU(19.2=33.3)
A:
PF0009223=VWA=PD(21.4=67.3)
C2:
PF0009223=VWA=FE(27.6=100)
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGCTGTAAGGATGCAGGTGTC
R:
CCTCCATCTGCATCTCTTTGGA
Band lengths:
242-404
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]