RnoEX6032278 @ rn6
Exon Skipping
Gene
ENSRNOG00000026415 | Col14a1
Description
collagen type XIV alpha 1 chain [Source:RGD Symbol;Acc:1305806]
Coordinates
chr7:95118849-95130538:+
Coord C1 exon
chr7:95118849-95119013
Coord A exon
chr7:95124923-95125084
Coord C2 exon
chr7:95130387-95130538
Length
162 bp
Sequences
Splice sites
3' ss Seq
CCTGTTATCCTCCATGGCAGGGG
3' ss Score
7.59
5' ss Seq
AAGGTAAGA
5' ss Score
10.57
Exon sequences
Seq C1 exon
GTCTTGCTTTGAACTTTATTTTTGAGAATAGCTTTAAGCCAGAAGCAGGATCGAGGAGTGGCGTTTCCAAGATTGGCATTTTAATCACAGATGGAAAGTCCCAGGATGATATTATCCCACCTTCTAGAAACCTCCGTGAGGCTGGTGTAGAGTTGTTTGCAATAG
Seq A exon
GGGTTAAAAATGCCGACCTGAGCGAGCTGCAGGAGATAGCCTCTGAGCCAGACAGCACCCATGTGTACAATGTCGCTGAGTTCGACCTGATGCACACAGTGGTGGAGAGCCTGACCCGGACCGTATGCTCCAGAGTGGAAGAGCAGGACAAGGAGATTAAAG
Seq C2 exon
CCTCAGCCCTTGCCACCATTGGGCCACCTACAGAGCTGATTACGTCTGAAGTCACCGCCAGGAGCTTTATGGTTAACTGGACTCACTCCCCAGGAAAAGTGGAAAAATACAGAGTTGTGTATTATCCCACCAGAGGTGGAAAGCCAGAGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000026415-'8-10,'8-9,10-10=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.054 A=0.055 C2=0.059
Domain overlap (PFAM):
C1:
PF0009223=VWA=FE(31.8=100)
A:
PF0009223=VWA=PD(21.4=67.3)
C2:
PF0004116=fn3=PU(53.8=84.3)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGAAGCAGGATCGAGGAGTGG
R:
TGGTGGGATAATACACAACTCTGT
Band lengths:
257-419
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]