GgaEX6022202 @ galGal4
Exon Skipping
Gene
ENSGALG00000016411 | col14A1
Description
collagen alpha-1(XIV) chain precursor [Source:RefSeq peptide;Acc:NP_990665]
Coordinates
chr2:136404107-136406447:+
Coord C1 exon
chr2:136404107-136404271
Coord A exon
chr2:136404675-136404836
Coord C2 exon
chr2:136406296-136406447
Length
162 bp
Sequences
Splice sites
3' ss Seq
GTTTTTGTTTTCGATGAAAGGTG
3' ss Score
5.64
5' ss Seq
AAGGTGAAT
5' ss Score
6.38
Exon sequences
Seq C1 exon
GTCTTGCGTTAACTTACATTTTGGAGAACAGCTTTAAGCCTGAAGCTGGTGCAAGGCCTGGGGTATCTAAAATCGGTATATTGATCACCGATGGGAAATCCCAAGATGATGTTATCCCTCCTGCTAAAAACCTACGGGATGCAGGCATTGAGCTGTTTGCTATTG
Seq A exon
GTGTGAAGAATGCAGATATAAATGAACTCAAAGAAATTGCCTCTGAACCTGACAGTACACACGTTTACAATGTTGCTGACTTCAACTTCATGAATTCTATTGTCGAAGGGCTTACCAGAACAGTGTGTTCACGAGTAGAGGAACAGGAAAAGGAAATCAAAG
Seq C2 exon
GAACAATTGCTGCTTCACTTGGAGCTCCCACAGATTTGGTCACATCTGATATAACAGCTAGAGGATTCCGTGTTAGCTGGACTCATTCTCCAGGCAAAGTGGAAAAATACAGAGTTGTGTATTATCCCACTCGAGGAGGACAGCCTGAAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000016411-'14-19,'14-18,15-19=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.054 A=0.036 C2=0.020
Domain overlap (PFAM):
C1:
PF0009223=VWA=FE(31.8=100)
A:
PF0009223=VWA=PD(21.4=67.3)
C2:
PF0004116=fn3=PU(53.8=84.3)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCAAGGCCTGGGGTATCTAA
R:
TGTCCTCCTCGAGTGGGATAA
Band lengths:
258-420
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]