BtaEX6063659 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000020120 | SEL1L2
Description
sel-1 suppressor of lin-12-like 2 (C. elegans) [Source:HGNC Symbol;Acc:HGNC:15897]
Coordinates
chr13:7581703-7586085:-
Coord C1 exon
chr13:7585914-7586085
Coord A exon
chr13:7585720-7585794
Coord C2 exon
chr13:7581703-7581875
Length
75 bp
Sequences
Splice sites
3' ss Seq
TCTTTTTTTTTTTTTTTAAGAAA
3' ss Score
8.86
5' ss Seq
AAGGTATCC
5' ss Score
8.33
Exon sequences
Seq C1 exon
ACACAGCTTTATAAAGGTGTCTGTGAACTAGGCCACTGGGCTGAGAAATTCCTGACAGCATACTTTGCTTATAAGAATGGTGATATAGATTCTTCTCTTGTTCAGTACGCACTGCTCGCAGAAATGGGGTATGAAGTAGCTCAAAGCAATTCAGCATTCATTTTGGAATCTA
Seq A exon
AAAAAGCTAAAATTCTCGAAAAAGAGAAGATGTATCCAATGGCACTTCTCCTGTGGAATCGAGCTGCCATTCAAG
Seq C2 exon
GCAATGCATTTGCTAGAGTGAAAATTGGAGATTACCATTACTATGGCTACGGGACCAAGAAAGACTATCAAACAGCAGCCACACATTATAGCATCGCGGCCGACAAGTATCACAGCGCTCAAGCCATGTTCAACCTGGGCTATATGTACGAACATGGTTTAGGTATCACAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000020120-'18-20,'18-18,19-20=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF082387=Sel1=WD(100=62.1),PF082387=Sel1=PU(52.9=31.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCTCGCAGAAATGGGGTATG
R:
TGAGCGCTGTGATACTTGTCG
Band lengths:
181-256
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]