HsaEX6077252 @ hg19
Exon Skipping
Gene
ENSG00000101251 | SEL1L2
Description
sel-1 suppressor of lin-12-like 2 (C. elegans) [Source:HGNC Symbol;Acc:15897]
Coordinates
chr20:13839908-13846160:-
Coord C1 exon
chr20:13845995-13846160
Coord A exon
chr20:13845813-13845887
Coord C2 exon
chr20:13839908-13840080
Length
75 bp
Sequences
Splice sites
3' ss Seq
GGAATGTCTCCTCTTTTTAGAAA
3' ss Score
7.76
5' ss Seq
AAGGTATGG
5' ss Score
9.26
Exon sequences
Seq C1 exon
CTTTATAAAGGTGTCTGTGAACTAGGCCACTGGGCTGAGAAATTCCTGACAGCTTACTTTGCCTATAAGGATGGTGATATAGATTCTTCTCTTGTTCAGTATGCACTGCTTGCAGAAATGGGGTATGAAGTAGCTCAAAGCAATTCAGCATTCATTTTGGAATCTA
Seq A exon
AAAAGGCTAACATTCTTGAAAAAGAGAAGATGTATCCAATGGCGCTTCTCCTATGGAATCGAGCTGCCATTCAAG
Seq C2 exon
GCAATGCATTTGCTAGAGTAAAAATTGGAGATTACCATTACTATGGCTATGGGACTAAGAAAGACTATCAAACAGCAGCCACACACTACAGCATTGCAGCCAACAAATACCACAACGCGCAAGCCATGTTCAATCTGGCTTATATGTATGAACACGGCTTAGGCATCACAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000101251-'22-27,'22-26,23-27=AN
Average complexity
A_C3
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF082387=Sel1=PD(25.0=16.1)
A:
NO
C2:
PF082387=Sel1=WD(100=62.1),PF082387=Sel1=PU(52.9=31.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CACTGCTTGCAGAAATGGGGT
R:
TGTTGGCTGCAATGCTGTAGT
Band lengths:
168-243
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)