RnoEX6019454 @ rn6
Exon Skipping
Gene
ENSRNOG00000004852 | Sel1l2
Description
SEL1L2 ERAD E3 ligase adaptor subunit [Source:RGD Symbol;Acc:1311278]
Coordinates
chr3:134289021-134292344:-
Coord C1 exon
chr3:134292179-134292344
Coord A exon
chr3:134291990-134292064
Coord C2 exon
chr3:134289021-134289193
Length
75 bp
Sequences
Splice sites
3' ss Seq
CCCTTTTCTTTTTCTTTTAGAAA
3' ss Score
11.78
5' ss Seq
AAGGTATAA
5' ss Score
7.08
Exon sequences
Seq C1 exon
CTTTATAAAGGAGTCTGTGAACTAGGCCACTGGGCTGAGAAATTCCTGACAGCCTACTTTGCCTATAAGGATGGGGACGTAGATTCTTCTCTAATTCAGTACGCGTTGCTTGCCGAAATGGGATATGAAGTAGCTCAAAGCAATTCAGCATTCATTTTGGAATCCA
Seq A exon
AAAAAGCTAAAATTCTGGGGAAAGAGAAGATGTATCCAATGGCACTTCTGCTATGGAACCGAGCTGCCATTCAAG
Seq C2 exon
GGAATGCTTTTGCTAGAGTGAAAATTGGAGATTACCATTACTATGGCTACGGGACTAAGAAGGACTATGAAACAGCAGCCACACACTACAGCATCGCAGCAGACAAGCATCACAGTGCGCAAGCCATGTTCAACCTGGCATATATGTATGAGCACGGCTTGGGGATTGCACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000004852-'22-24,'22-23,23-24=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF082387=Sel1=PD(25.0=16.1)
A:
NO
C2:
PF082387=Sel1=WD(100=62.1),PF082387=Sel1=PU(52.9=31.0)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AATTCAGTACGCGTTGCTTGC
R:
TTGTCTGCTGCGATGCTGTAG
Band lengths:
180-255
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]