BtaEX6063753 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000019488 | USP6NL
Description
USP6 N-terminal like [Source:HGNC Symbol;Acc:HGNC:16858]
Coordinates
chr13:12817159-12822282:+
Coord C1 exon
chr13:12817159-12817207
Coord A exon
chr13:12818955-12819075
Coord C2 exon
chr13:12822188-12822282
Length
121 bp
Sequences
Splice sites
3' ss Seq
CTGTTCTCGTTTCTCTTTAGGAG
3' ss Score
11.24
5' ss Seq
ACGGTAAGA
5' ss Score
10.65
Exon sequences
Seq C1 exon
GCAACAATCCCTGTTCCACGTTCTTGCTGCATATTCTATTTATAATACG
Seq A exon
GAGGTTGGATACTGTCAGGGGATGAGCCAGATCACAGCCTTGCTCCTCATGTATATGAACGAGGAAGATGCCTTCTGGGCCCTGGTCAAGCTGTTCTCAGGTCCCAAACACGCCATGCACG
Seq C2 exon
GATTTTTTGTCCATGGTTTTCCCAAACTCTTGAGGTTTCAAGAACATCATGAAAAAATACTGAATAAATTTTTGTCCAAGCTTAAGCAGCACTTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000019488-'14-15,'14-13,15-15=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0056613=RabGAP-TBC=FE(13.1=100)
A:
PF0056613=RabGAP-TBC=FE(19.0=100)
C2:
PF0056613=RabGAP-TBC=FE(14.8=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCAACAATCCCTGTTCCACGT
R:
CTGCTTAAGCTTGGACAAAAATTT
Band lengths:
138-259
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]