RnoEX0097509 @ rn6
Exon Skipping
Gene
ENSRNOG00000017644 | Usp6nl
Description
USP6 N-terminal like [Source:RGD Symbol;Acc:1311786]
Coordinates
chr17:75778694-75782540:-
Coord C1 exon
chr17:75782492-75782540
Coord A exon
chr17:75781641-75781761
Coord C2 exon
chr17:75778694-75778788
Length
121 bp
Sequences
Splice sites
3' ss Seq
TTGTTCTCATTGTGTGTTAGGAG
3' ss Score
7.52
5' ss Seq
ATGGTAAGA
5' ss Score
9.48
Exon sequences
Seq C1 exon
GCAGCAATCCTTGTTCCACGTTCTTGCTGCCTACTCCATCTACAATACG
Seq A exon
GAGGTCGGGTACTGTCAAGGGATGAGTCAGATCACAGCTCTGCTCCTGATGTACATGAATGAGGAGGACGCCTTCTGGGCCCTGGTCAAGCTCTTCTCAGGCCCCAAGCACGCCATGCATG
Seq C2 exon
GTTTTTTTGTCCAAGGTTTCCCTAAACTCTTGAGATTTCAAGAACATCATGAGAAAATTCTGAACAAATTTTTGTCCAAACTAAAGCAGCACTTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000017644_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0056613=RabGAP-TBC=FE(7.6=100)
A:
PF0056613=RabGAP-TBC=FE(19.0=100)
C2:
PF0056613=RabGAP-TBC=FE(14.8=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCAGCAATCCTTGTTCCACGT
R:
AGTGCTGCTTTAGTTTGGACA
Band lengths:
142-263
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]