GgaEX0009588 @ galGal4
Exon Skipping
Gene
ENSGALG00000006706 | USP6NL
Description
USP6 N-terminal-like protein [Source:RefSeq peptide;Acc:NP_001026011]
Coordinates
chr1:5916404-5919934:-
Coord C1 exon
chr1:5919886-5919934
Coord A exon
chr1:5917967-5918087
Coord C2 exon
chr1:5916404-5916498
Length
121 bp
Sequences
Splice sites
3' ss Seq
TTTCACTGTGTAATTTTCAGGAA
3' ss Score
10.27
5' ss Seq
ATGGTATGA
5' ss Score
6.56
Exon sequences
Seq C1 exon
GCAACAATCTTTATTCCACGTTTTAGCTGCATATTCCATATATAATACG
Seq A exon
GAAGTTGGATACTGTCAGGGAATGAGCCAGATCACAGCTTTACTCCTAATGTACATGAATGAAGAAGATGCCTTCTGGGCCTTGGTGAAACTTCTCTCGGGTCCAAAGCATGCTATGCATG
Seq C2 exon
GTTTTTTTATTCCTGGTTTTCCGAAACTTTTGAGGTTTCAAGAACATCATGACAAAATACTGAATAAGTTTTTGTCCAAACTTAAGCAGCATTTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000006706_MULTIEX1-8/13=7-9
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0056613=RabGAP-TBC=FE(7.6=100)
A:
PF0056613=RabGAP-TBC=FE(19.0=100)
C2:
PF0056613=RabGAP-TBC=FE(14.8=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATCTTTATTCCACGTTTTAGCTGCA
R:
CAAATGCTGCTTAAGTTTGGACA
Band lengths:
138-259
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]