DreEX0083962 @ danRer10
Exon Skipping
Gene
ENSDARG00000022187 | usp6nl
Description
USP6 N-terminal like [Source:ZFIN;Acc:ZDB-GENE-041210-192]
Coordinates
chr4:24063389-24064418:-
Coord C1 exon
chr4:24064370-24064418
Coord A exon
chr4:24064085-24064205
Coord C2 exon
chr4:24063389-24063483
Length
121 bp
Sequences
Splice sites
3' ss Seq
GTGTGTGTGTGTGAGTGTAGGAG
3' ss Score
2.15
5' ss Seq
ACGGTATAA
5' ss Score
4.59
Exon sequences
Seq C1 exon
ACAGCAGGATCTGTTTCATGTGCTCACAGCTTACTCTGTGTACAACACG
Seq A exon
GAGGTGGGCTATTGTCAGGGCATGAGTCAGATCACTGCGCTGTTACTCATCTATATGAATGAGGAAGATGCTTTCTGGGCGCTTGTTAAACTGCTGTCTGGACAGAGACACACCATGCACG
Seq C2 exon
GTTTCTTTGTACCAGGGTTCCCTAAACTTATGCGCTTCCAGGAGCATCATGATCGTATTCTGCAGAAGATGATGCCTAAACTTAAACAACATCTA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000022187_CASSETTE2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0056613=RabGAP-TBC=FE(7.6=100)
A:
PF0056613=RabGAP-TBC=FE(19.0=100)
C2:
PF0056613=RabGAP-TBC=FE(14.8=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGCAGGATCTGTTTCATGTGCT
R:
TGTTGTTTAAGTTTAGGCATCATCT
Band lengths:
138-259
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]