HsaEX0070009 @ hg19
Exon Skipping
Gene
ENSG00000148429 | USP6NL
Description
USP6 N-terminal like [Source:HGNC Symbol;Acc:16858]
Coordinates
chr10:11527816-11532879:-
Coord C1 exon
chr10:11532831-11532879
Coord A exon
chr10:11531101-11531221
Coord C2 exon
chr10:11527816-11527910
Length
121 bp
Sequences
Splice sites
3' ss Seq
TGTTCCCCTTTGCTCCCCAGGAA
3' ss Score
10.59
5' ss Seq
ATGGTAAGA
5' ss Score
9.48
Exon sequences
Seq C1 exon
GCAACAATCCTTATTCCATGTGCTTGCTGCCTATTCTATTTATAACACG
Seq A exon
GAAGTCGGGTATTGTCAGGGGATGAGCCAGATCACAGCTTTACTCCTCATGTATATGAACGAGGAAGATGCCTTCTGGGCCCTGGTCAAACTCTTCTCAGGCCCTAAACATGCCATGCATG
Seq C2 exon
GCTTTTTTGTCCAAGGTTTTCCTAAACTCTTGAGGTTTCAAGAACATCATGAAAAAATACTGAACAAATTTCTGTCCAAGCTTAAGCAACACTTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000148429-'15-20,'15-19,18-20
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0056613=RabGAP-TBC=FE(19.5=100)
A:
PF0056613=RabGAP-TBC=FE(19.0=100)
C2:
PF0056613=RabGAP-TBC=FE(14.8=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACAATCCTTATTCCATGTGCTTGC
R:
AGTGTTGCTTAAGCTTGGACAGA
Band lengths:
139-260
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)