GgaEX0009588 @ galGal3
Exon Skipping
Gene
ENSGALG00000006706 | LOC419104
Description
NA
Coordinates
chr1:6163905-6167435:-
Coord C1 exon
chr1:6167387-6167435
Coord A exon
chr1:6165468-6165588
Coord C2 exon
chr1:6163905-6163999
Length
121 bp
Sequences
Splice sites
3' ss Seq
TTTCACTGTGTAATTTTCAGGAA
3' ss Score
10.27
5' ss Seq
ATGGTATGA
5' ss Score
6.56
Exon sequences
Seq C1 exon
GCAACAATCTTTATTCCACGTTTTAGCTGCATATTCCATATATAATACG
Seq A exon
GAAGTTGGATACTGTCAGGGAATGAGCCAGATCACAGCTTTACTCCTAATGTACATGAATGAAGAAGATGCCTTCTGGGCCTTGGTGAAACTTCTCTCGGGTCCAAAGCATGCTATGCATG
Seq C2 exon
GTTTTTTTATTCCTGGTTTTCCGAAACTTTTGAGGTTTCAAGAACATCATGACAAAATACTGAATAAGTTTTTGTCCAAACTTAAGCAGCATTTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000006706-'21-17,'21-16,22-17
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0056613=RabGAP-TBC=FE(7.6=100)
A:
PF0056613=RabGAP-TBC=FE(19.0=100)
C2:
PF0056613=RabGAP-TBC=FE(14.8=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATCTTTATTCCACGTTTTAGCTGCA
R:
CAAATGCTGCTTAAGTTTGGACA
Band lengths:
138-259
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]