BtaEX6064933 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000006531 | DIP2C
Description
DIP2 disco-interacting protein 2 homolog C (Drosophila) [Source:HGNC Symbol;Acc:HGNC:29150]
Coordinates
chr13:47125940-47128595:+
Coord C1 exon
chr13:47125940-47126076
Coord A exon
chr13:47127231-47127439
Coord C2 exon
chr13:47128481-47128595
Length
209 bp
Sequences
Splice sites
3' ss Seq
CAAGAGTTCATTGTCCCCAGGTG
3' ss Score
5.56
5' ss Seq
AAGGTGGGT
5' ss Score
8.23
Exon sequences
Seq C1 exon
CCATCATGTGTTCAGTGAAGCCTGATGGGGTTCCCCAGCTGTGCAGGACAGACGAAGTCGGGGAGCTCTGCGTGTGCGCGGTGGCCACGGGCATGTCCTACTATGGCCTCTCGGGTATGACCAAGAACACCTTCGAG
Seq A exon
GTGTTCCCGGTGACGAGCTCAGGGGCCCCGGTCAGTGAGTACCCCTTCGTGAGGACGGGCTTGCTTGGCTTCGTTGGCCCTGGAGGGCTTGTGTTCGTGGTGGGCAAGATGGACGGGCTTATGGTGGTCAGCGGGCGCAGACACAACGCTGATGACATCGTGGCCACAGCACTGGCTGTGGAACCCATGAAGTTCGTCTACAGGGGAAG
Seq C2 exon
AATAGCCGTGTTTTCAGTGACTGTCCTGCACGACGAAAGGATTGTGATTGTGGCTGAGCAGAGGCCAGACTCCACGGAAGAGGACAGCTTCCAGTGGATGAGCAGGGTGCTGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000006531-'23-26,'23-25,25-26=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0050123=AMP-binding=FE(9.4=100)
A:
PF0050123=AMP-binding=PD(9.0=61.4)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCATCATGTGTTCAGTGAAGCCT
R:
ACCCTGCTCATCCACTGGAAG
Band lengths:
245-454
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]