GgaEX6018476 @ galGal3
Exon Skipping
Gene
ENSGALG00000006652 | DIP2C
Description
NA
Coordinates
chr2:9921226-9924544:-
Coord C1 exon
chr2:9924408-9924544
Coord A exon
chr2:9921972-9922180
Coord C2 exon
chr2:9921226-9921340
Length
209 bp
Sequences
Splice sites
3' ss Seq
TGTGTTTCTGTGTCTTAAAGGTG
3' ss Score
10.37
5' ss Seq
CAGGTTTGA
5' ss Score
5.11
Exon sequences
Seq C1 exon
CTATAATGTGTTCAGTAAAGCCAGATGGAATTCCTCAGCTCTGTAAAACAGATGAAATAGGAGAACTATGTGTATGTGCTATTGCAACGGGTACATCGTATTATGGACTCTCGGGCATGACCAAAAACACTTTTGAG
Seq A exon
GTGTTTCCTATGACCAGTTCTGGTGGCCCTATTACTGAATATCCGTTTATAAGGACTGGACTACTAGGCTTTATAGGACCGGGTGGACTTGTCTTTGTTATTGGCAAAATGGATGGTTTGATGGTTGTCAGTGGAAGAAGACATAATGCTGATGACATTGTAGCAACAGCACTGGCAGTGGAACCAATGAAATTTGTCTACAGGGGCAG
Seq C2 exon
AATAGCAGTGTTTTCAGTGAGTGTGCTGCACGATGAAAGGATAGTTATTGTTGCTGAGCAAAGGCCGGATTCCACGGAGGAAGACAGTTTTCAGTGGATGAGCAGAGTCCTGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000006652-'18-21,'18-20,19-21=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0050123=AMP-binding=FE(9.4=100)
A:
PF0050123=AMP-binding=PD(9.0=61.4)
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATGTGTTCAGTAAAGCCAGATGGA
R:
CAGGACTCTGCTCATCCACTG
Band lengths:
244-453
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]