DreEX6095466 @ danRer10
Exon Skipping
Gene
ENSDARG00000062154 | dip2ca
Description
DIP2 disco-interacting protein 2 homolog Ca (Drosophila) [Source:ZFIN;Acc:ZDB-GENE-031118-39]
Coordinates
chr24:27099176-27103611:+
Coord C1 exon
chr24:27099176-27099312
Coord A exon
chr24:27101806-27102014
Coord C2 exon
chr24:27103497-27103611
Length
209 bp
Sequences
Splice sites
3' ss Seq
GCTGGCTTTTGTTTTGTCAGGTG
3' ss Score
7.71
5' ss Seq
CAGGTGAGA
5' ss Score
9.22
Exon sequences
Seq C1 exon
CTCTGATGTGTGTGGTCAAACCGGAGGGAGTTCCTCAGCTGTGTCGAACAGATGAGATCGGAGAGCTGTGTGTTTGTTCCATCGCCACAGGAATGTCATATTATGGGCTCTCGGGCATGACAAAAAACACATTTGAG
Seq A exon
GTGTTTCCCATGACCATCTCTGGGGCTCCTATCAGCGAGTATCCCTTTATCCGCACAGGGCTACTGGGCTTCATTGGTCCCGGTGGCCTGGTGTTCATCTCTGGAAAGATGGACGGTCTGATGGTGGTGAGTGGACGGAGACACAACGCTGATGATATTGTGGCCACGGCATTGGCGGTGGAGCCCATGAAGTTTGTGTACAGGGGCAG
Seq C2 exon
GATAGCGGTGTTTTCAGTGACGGTCCTGCATGACGAGAGGATTGTGGTGGTAGCAGAGCAGAGGCCGGACTCTACAGAAGAGGACAGCTTCCAGTGGATGAGCCGAGTGCTGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000062154-'22-27,'22-26,25-27=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.026
Domain overlap (PFAM):
C1:
PF0050123=AMP-binding=FE(9.4=100)
A:
PF0050123=AMP-binding=PD(9.0=61.4)
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCTGATGTGTGTGGTCAAACCG
R:
ACTCGGCTCATCCACTGGAAG
Band lengths:
244-453
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]