MmuEX0014715 @ mm9
Exon Skipping
Gene
ENSMUSG00000048264 | Dip2c
Description
DIP2 disco-interacting protein 2 homolog C (Drosophila) [Source:MGI Symbol;Acc:MGI:1920179]
Coordinates
chr13:9603735-9608304:+
Coord C1 exon
chr13:9603735-9603871
Coord A exon
chr13:9605569-9605777
Coord C2 exon
chr13:9608190-9608304
Length
209 bp
Sequences
Splice sites
3' ss Seq
TGCAGCCTTGTTTCCCCTAGGTA
3' ss Score
10.05
5' ss Seq
CAGGTTAGT
5' ss Score
8.02
Exon sequences
Seq C1 exon
CCATCATGTGTTCAGTGAAGCCAGATGGGATTCCTCAGTTGTGCAGGACGGATGAAATCGGGGAGCTCTGTGTCTGTGCAGTTGCCACAGGAACATCATATTATGGTCTCTCTGGCATGACCAAGAACACCTTTGAG
Seq A exon
GTATTTCCCATGACAAGCTCCGGGGCTCCGATCAGTGAATACCCATTCATAAGGACAGGTTTGCTGGGATTTGTTGGTCCTGGGGGCCTCGTCTTTGTTGTGGGTAAGATGGACGGCCTGATGGTAGTCAGTGGAAGAAGACACAATGCAGATGACATTGTGGCCACAGCCTTAGCTGTAGAGCCCATGAAGTTTGTCTACAGAGGCAG
Seq C2 exon
GATAGCTGTGTTCTCAGTGACTGTCCTTCATGATGAAAGGATAGTGATTGTGGCTGAGCAGAGGCCGGACTCCACAGAGGAAGACAGTTTCCAGTGGATGAGCAGAGTACTCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000048264-'23-29,'23-28,24-29
Average complexity
S
Mappability confidence:
88%=75=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0050123=AMP-binding=FE(10.6=100)
A:
PF0050123=AMP-binding=PD(10.1=61.4)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCATCATGTGTTCAGTGAAGCC
R:
CTGGAGTACTCTGCTCATCCAC
Band lengths:
252-461
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: