RnoEX0027969 @ rn6
Exon Skipping
Gene
ENSRNOG00000015288 | Dip2c
Description
disco-interacting protein 2 homolog C [Source:RGD Symbol;Acc:1560155]
Coordinates
chr17:63744544-63748808:+
Coord C1 exon
chr17:63744544-63744680
Coord A exon
chr17:63746286-63746494
Coord C2 exon
chr17:63748694-63748808
Length
209 bp
Sequences
Splice sites
3' ss Seq
TTGTAGCCTTGTTCCCCTAGGTA
3' ss Score
9.11
5' ss Seq
AAGGTTAGT
5' ss Score
8.54
Exon sequences
Seq C1 exon
CCATCATGTGTTCAGTGAAGCCGGATGGGGTGCCTCAGCTGTGCAGGACGGATGAAATTGGGGAGCTCTGTGTCTGTGCAGTTGCCACAGGAACGTCATATTATGGTCTCTCGGGCATGACCAAGAACACCTTTGAG
Seq A exon
GTATTTCCCATGACAAGCTCTGGGGCTCCAATCAGTGAATACCCATTCATAAGGACAGGTTTGCTGGGATTTGTTGGTCCTGGGGGCCTCGTCTTTGTTGTGGGTAAGATGGACGGCCTGATGGTAGTGAGTGGACGAAGACACAATGCAGATGACATTGTGGCCACAGCCCTAGCTGTAGAGCCCATGAAGTTTGTCTACAGAGGAAG
Seq C2 exon
GATAGCTGTGTTCTCAGTGACTGTCCTTCATGATGAAAGGATAGTGATTGTGGCTGAGCAGAGGCCGGATTCCACAGAAGAAGACAGTTTCCAGTGGATGAGCAGAGTACTCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000015288-'36-33,'36-32,37-33
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0050123=AMP-binding=FE(9.4=100)
A:
PF0050123=AMP-binding=PD(9.0=61.4)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCATCATGTGTTCAGTGAAGCC
R:
CTGGAGTACTCTGCTCATCCAC
Band lengths:
252-461
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]