HsaEX6087274 @ hg19
Exon Skipping
Gene
ENSG00000151240 | DIP2C
Description
DIP2 disco-interacting protein 2 homolog C (Drosophila) [Source:HGNC Symbol;Acc:29150]
Coordinates
chr10:409137-412351:-
Coord C1 exon
chr10:412215-412351
Coord A exon
chr10:410314-410522
Coord C2 exon
chr10:409137-409251
Length
209 bp
Sequences
Splice sites
3' ss Seq
ATGGATGCTGTTTCCCCCAGGTG
3' ss Score
9.22
5' ss Seq
AAGGTCAGT
5' ss Score
8.68
Exon sequences
Seq C1 exon
CCATCATGTGTTCAGTGAAGCCAGACGGGGTTCCTCAGCTGTGCAGAACGGATGAGATCGGGGAGCTGTGTGTGTGTGCAGTTGCGACGGGCACGTCCTACTATGGCCTCTCTGGCATGACCAAGAACACCTTTGAG
Seq A exon
GTGTTTCCCATGACAAGCTCCGGGGCTCCGATCAGTGAATACCCATTCATAAGGACAGGCTTGCTGGGGTTCGTGGGTCCCGGAGGCCTCGTCTTCGTGGTGGGCAAGATGGATGGCCTCATGGTGGTCAGCGGGCGCAGGCACAACGCCGACGACATCGTGGCCACTGCGCTGGCCGTAGAACCCATGAAGTTTGTCTACCGGGGAAG
Seq C2 exon
GATAGCCGTGTTCTCGGTGACCGTGCTGCACGACGAGAGGATCGTGATCGTGGCTGAGCAGAGGCCTGACTCCACGGAAGAGGACAGTTTCCAGTGGATGAGCCGTGTGCTGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000151240-'23-27,'23-26,26-27=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.011 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0050123=AMP-binding=FE(19.7=100),PF0022721=Proteasome=FE(60.8=100)
A:
PF0050123=AMP-binding=PD(36.8=61.4)
C2:
NO
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCATCATGTGTTCAGTGAAGCC
R:
CACGGCTCATCCACTGGAAAC
Band lengths:
244-453
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)