BtaEX6064936 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000006531 | DIP2C
Description
DIP2 disco-interacting protein 2 homolog C (Drosophila) [Source:HGNC Symbol;Acc:HGNC:29150]
Coordinates
chr13:47111040-47125432:+
Coord C1 exon
chr13:47111040-47111159
Coord A exon
chr13:47112324-47112438
Coord C2 exon
chr13:47125293-47125432
Length
115 bp
Sequences
Splice sites
3' ss Seq
CATCCCTTCTTTCTGTTTAGGGT
3' ss Score
11.74
5' ss Seq
GAGGTACAA
5' ss Score
5.13
Exon sequences
Seq C1 exon
CAAAAGTGGCCTGTGTCAAATCCCGGGACATGCACTGGGCCTTGGTGGCGCACAGGGATCAGAGAGACATCAACCTCTCCTCTCTCCGGATGCTGATAGTGGCCGACGGTGCAAACCCCT
Seq A exon
GGTCTATTTCTTCCTGTGATGCATTTCTCAACGTCTTCCAAAGTAAAGGTCTACGCCAGGAGGTCATCTGCCCCTGCGCCAGCTCACCAGAGGCTCTCACTGTGGCCATCCGGAG
Seq C2 exon
GCCCACCGATGACAGCAACCAGCCCCCGGGCCGTGGCGTCCTCTCCATGCATGGGCTGACCTATGGGGTCATCCGAGTGGACTCAGAGGAAAAGCTGTCTGTACTCACCGTGCAAGATGTCGGCCTCGTGATGCCTGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000006531-'19-23,'19-21,20-23=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.077 C2=0.229
Domain overlap (PFAM):
C1:
PF0050123=AMP-binding=FE(8.4=100)
A:
PF0050123=AMP-binding=FE(8.0=100)
C2:
PF0050123=AMP-binding=FE(9.9=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAGTGGCCTGTGTCAAATCCC
R:
CATCACGAGGCCGACATCTTG
Band lengths:
250-365
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]