RnoEX6053851 @ rn6
Exon Skipping
Gene
ENSRNOG00000015288 | Dip2c
Description
disco-interacting protein 2 homolog C [Source:RGD Symbol;Acc:1560155]
Coordinates
chr17:63715322-63740125:+
Coord C1 exon
chr17:63715322-63715441
Coord A exon
chr17:63716672-63716786
Coord C2 exon
chr17:63739986-63740125
Length
115 bp
Sequences
Splice sites
3' ss Seq
TTGTCCCTCTTTCCCTCCAGGGT
3' ss Score
12.58
5' ss Seq
GAGGTACTG
5' ss Score
7.67
Exon sequences
Seq C1 exon
CAAAAGTGGCTTGTGTGAAATCAAGAGACATGCACTGGGCACTTGTAGCACACAGAGATCAGAGAGATGTCAACCTGTCCTCCCTGCGCATGTTAATAGTGGCCGATGGAGCAAATCCCT
Seq A exon
GGTCTATTTCTTCTTGTGATGCGTTTCTCAATGTCTTCCAGAGTAAAGGCCTTCGACAGGAGGTCATCTGTCCCTGTGCCAGCTCACCAGAGGCCCTCACTGTGGCAATCCGGAG
Seq C2 exon
GCCTACAGATGACAGCAACCAGCCACCAGGGCGAGGTGTGCTATCCATGCATGGGCTGACCTATGGTGTGATCCGTGTGGATTCCGAGGAGAAGCTGTCCGTGCTCACCGTGCAGGATGTCGGCCTTGTCATGCCTGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000015288-'31-29,'31-25,32-29=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.077 C2=0.229
Domain overlap (PFAM):
C1:
PF0050123=AMP-binding=FE(8.4=100)
A:
PF0050123=AMP-binding=FE(8.0=100)
C2:
PF0050123=AMP-binding=FE(9.9=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGCTTGTGTGAAATCAAGAGACA
R:
CATGACAAGGCCGACATCCTG
Band lengths:
247-362
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]